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Of the 39 cases, 34 are from the worst affected northernmost district of Kasaragod, he told reporters after a COVID-19 review meeting here.
From Kannur two cases were reported and one each from Thrissur, Kozhikode and Kollam, he said.
A total of 1,10,299 people are under surveillence and 616 are in isolation wards of various hospitals, he said.