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A National Center for Seismology report said the latest quake was recorded at 1.07 am, with its epicentre near Tezpur, the headquarter of Sonitpur district, at a depth of 30 kms.
There was no immediate report of injury or damage to property.
The state was rocked by two more quakes, including a 4.1-magnitude one early on Friday, which also had its epicentre in Sonitpur district.
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No loss of life or property has been reported in any of the temblors.
The northeastern region sits over a high seismic zone, making it prone to earthquakes.
A strong 6.4-magnitude quake had shaken Assam on April 28.